MmuEX6020205 @ mm9
Exon Skipping
Gene
ENSMUSG00000063919 | Srrm4
Description
serine/arginine repetitive matrix 4 [Source:MGI Symbol;Acc:MGI:1916205]
Coordinates
chr5:116927068-117041826:-
Coord C1 exon
chr5:117041343-117041826
Coord A exon
chr5:116932399-116932545
Coord C2 exon
chr5:116927068-116927154
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCTTATCTCTTCCCCTGCAGGAC
3' ss Score
12.48
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCACGCACGGCAGACGCCCCGGTCGCCTCCTCTCTGTTCTCTGCGCGGTAGAGAAAGCCGGCTAGCTTTGCTTCGCCGAAGACACGGAGCTCAGCCTGCTCCCAGCGCAGCTCAGAGCCAAGCCAAGAGGTGAACCCAGCCGGGGAACCACCTTCTTTCTCCGCTGCCTGCCTAACCCGAGACGTCCCGTTCTATCCCATCCCCCGCCCTGAACTCCGATCTCTCCCCACCCCACCCCTTGGGGGTTTCACGCGGACAGCGCCCCGGAGCCCAGGGCGTGTCATCGGGTTTGTAATCCACGTTTCAGCACTTCGGACAGCGCCCCAGGCTCCCGGGCTCCTTGGGCTTTCAGGATGGCTAGCCTGCAGCAGGGCGAGAAACAGCTGTTTGAGAAGTTCTGGAAAGGGACCTTCAAAGCAGTGGCCACTCCGCGTCCCGAGAGCATCATCGTCGCCAGTATCACAGCCCGCAAGCCGATGCCAAG
Seq A exon
GACAGAGCCCCAGAGCAGTCTCTTGCTCCCAGATCAGGATGGACCTTCAGAAAAGCTGGGCCAACATCTGGCCCCTGAGGCCCTGGGTACCAACAGCTGGGGAAGAGAGAAGGCCTGCAGGGAACTGGATCCTGCCAGAGCACACAG
Seq C2 exon
TGCCTCTCAAGACAGAGACCCGACACCACCACCTTCCTCCAGGGGGAAAAAGAAAAAGAAGAAATCAACCAGGAAAAAGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063919-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACGTTTCAGCACTTCGG
R:
CTTTTTCCCCCTGGAGGAAGG
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: