DreEX0075259 @ danRer10
Exon Skipping
Gene
ENSDARG00000086327 | srrm4
Description
serine/arginine repetitive matrix 4 [Source:ZFIN;Acc:ZDB-GENE-050208-34]
Coordinates
chr5:15239035-15271782:+
Coord C1 exon
chr5:15239035-15239297
Coord A exon
chr5:15259351-15259485
Coord C2 exon
chr5:15271693-15271782
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTGTTCTTCCAGATT
3' ss Score
10.78
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CTTGGAGTCACGGTCAAGAGTTCTGAGTGCAAAGGCCGGCGGCCATTTTGTAGATCAGATCGCTACAATGTTTATGCGTGAAAGTATGGCTCCACTCTCACCAGCAGCTGGTTTGGATATCAGTGCACCTTTTCATGGATGTATATCGACGAATGAAGGTGTTATGGAATAATGTTTATGGATTAGATTGCCTGGTCATTTGCCTTCGAACTATTTCAGCTGTCAGAATGTTATGGATCTGCTGACCAGCGGGAGGCTGAGAG
Seq A exon
ATTGGAGACTCCAGTCGGCCCCAAAGATGACGAGGAGAAAGTGAAAGCGAAGGATTTGGTCACGAAAACTCACGAGAAAAATGGACACATAAAGCGAAGAGGACGTAAACGCCACAGTCACCGCCGAGCTCGCAG
Seq C2 exon
TGTGTCTTTTGATGCTGATCTTTCCCCTCGGCCAGTGCCTAAAACGAAGAAAAAGAAGAAGAAATCGCAGAGGAAGAGGAGGAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086327-'4-4,'4-3,5-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGGCCATTTTGTAGATCA
R:
CCGAGGGGAAAGATCAGCATC
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]