GgaEX1001782 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C6U3]
Coordinates
chr15:9744374-9754570:-
Coord C1 exon
chr15:9754440-9754570
Coord A exon
chr15:9745877-9746020
Coord C2 exon
chr15:9744374-9744457
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTGGCCTCTTGCCATGCAGTGG
3' ss Score
6.86
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGGCCAGCGTGCAGCAGGGCGAGAAGCAGCTCTTCGAGAAGTTCTGGCGAGGGACCTTCAAAGCCGTGGCCACACCGCGACCGGAGAGCATCATCGTGGCCAGCATCACCGCCCGCAAACCGCTGCCCAG
Seq A exon
TGGGACGCTCAGCTGCCTGCCGTACCCTGCCGAAGATCGACGTCCTGAGAAGCTGAGCAGCTGTGTGTCCAAGGAGACCTCCACCACTAATGGCTGGGCAAGAGGGAAGGAGAGACGCGACCATGCTCACCACAGGTCACGCAG
Seq C2 exon
CCCGTCGTGTGATGGGGAACGTGCACCACCGCCGGCCCGGGGGAAGAAGAAGAAGAAGAAATCCAGCCGCAAGAAGCGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007388_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCAGGGCGAGAAG
R:
GCTTCTTGCGGCTGGATTTCT
Band lengths:
199-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]