GgaEX1001979 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13721431-13756769:-
Coord C1 exon
chr1:13756603-13756769
Coord A exon
chr1:13727220-13727302
Coord C2 exon
chr1:13721431-13721640
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTTTCTCTTCCCTAGCTA
3' ss Score
10.3
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
ATCTCCAGAAAATGAGTCAAGCTGGTGATGAAAGTTCCAGTTCCGATGAAAAAGAATTGGAAGTCGAGAAGGAGCAACCTATCTGTGCTTTAGCTCCAACAGTATATACCCGAGACGAAGGATCCACTGATGTAACATCAAGTCCTGCATTTCAGTGTTTAGATGAG
Seq A exon
CTATTTTCTGCTGGAAAACTCACCAGCTCCAGAGTAGCTGAGCTGAAGGCAAAGTACAACCTGCTGCATGAAACTGTGAGAAG
Seq C2 exon
TTTACAGGAATCTGAGATCCAGCTGTTGCAGGAAGCCAAACGTCTTAGTGTAGACCTGGAACAGCAGCAGCATGAACTGGAAAAAGCAGAACAGTTCCCTGAAGAATCTTCCAGTGAAGTCTGCCGAATAAGGCAACAGCTTCTTAATTGCCAAAATGAGTACAACGCTATTAAAGAAAGAGAGCATGAAATTCAGTTCAGGATAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTCGAGAAGGAGCAACC
R:
GCTGCTGTTCCAGGTCTACAC
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]