MmuEX0009594 @ mm9
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:20836358-20905667:-
Coord C1 exon
chr5:20905435-20905667
Coord A exon
chr5:20838838-20838920
Coord C2 exon
chr5:20836358-20836567
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATCTATCTTCTCTATAATAGCTG
3' ss Score
6.77
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AACTGTGAAAAATGGAATACAATAGCAAAGATGCAGAAGAAGAAACTGAAGATGAAGAGGAGGGACTGAAGGAGGCGGAGGGGGAGGAACAGGAGAAGGAGGAGGTAACAGCAACCTCAGAAACAGACGATGACCAAGAAGACCTCCCTTCTGTCTTAGTGCCTACAGTTAACATTCGGGAGGAGCGGCTCATCAATTTAGCTGAAACACCAGCTTTCCTCTGTCTGCATGAG
Seq A exon
CTGCACTCCAAGGGAAAACTTCCTGGAACCAGAATGGCAGAGTTGAAAGCCAAGTACACCTTGCTACACGATACAGTGGTGAG
Seq C2 exon
CACGCAGGAGTCTGAGGTGCAGCTACTGGAGAACGCCAAGCGCTTCACGGAGCAGATCCAGCAGCAGCAGGTCTGTCTGCAGCAGGCCGAAGACTTCCCCAACGTCTTCACCACTGAGGTCTGCAAACTTCGGGAGCAGCTGCTCAAGTACCAAAATGAATACACGGCAGCGCAAGAAAGGGAGTACAATATTCAGTACAGGCTGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280-'1-5,'1-2,2-5
Average complexity
S
Mappability confidence:
75%=100=67%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAACATTCGGGAGGAGCGG
R:
GGTGAAGACGTTGGGGAAGTC
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: