GgaEX1002403 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr8:19315964-19319691:+
Coord C1 exon
chr8:19315964-19316056
Coord A exon
chr8:19316282-19317233
Coord C2 exon
chr8:19317895-19319691
Length
952 bp
Sequences
Splice sites
3' ss Seq
TGACGCCGCTGTTCCCGCAGAGG
3' ss Score
9.92
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
ATGGCGGCGGCCGTGGACGAGAGCGCGCTGCCCTCCATCTCCACCTTCACCAACCTGTTGCCGCTGGAGGAGCGGCCCCCCGACATGATGCAC
Seq A exon
AGGATGCTGCAACACGACGGCTCCGCCGCTGCCGTGAAGCGGGAGGAGGACGAGTTGGGCAAATTCGTGGATTTGGACTTCATCCTGGCGCACACCAGCAGCGGCGGGCAGGGACCGCCCGGCCCCAATTACCCTCTGCCTGAGACCCCCGAGAGCTGCGGCACCACGTACGACAGCGACGGCTCCTACCCCACGCCGGGCAAGTTCCCGGCGCCGTACCCCGACGGCCAGAGCCACAGCTACGTGGCCGAGCTTCTCACCCCGGACCTGCCCGCGCACTGCGACCTGCAGCGGAGGGAGTACACGGAGCTGCGGGTGCCCGGCGGCCCCCACCACCACCCGGCCCTGCACCCGGCCCTGTCCCGCCCGCTGCCCCTGGACCCGTCGCAGCCTTTCGGGCCTCGCATCAAGAAGGAGCAGCCGGAGGAGCGCGCCTGCATGCTGGGGTTACCTGGCGGCGAGTACCTGGGACCGGGAGGTGGTGAACACAAGCCCCCCCGCATGGCGCCGGGCCCGGTGTCGGGGCCACCGCTGCCGTACCCTGGTTTCGCCCACGGCCGCTTGGGCCCCCCCGAGGAGCCGCTGCCCGGTGCCGACCCGCACCTGCTGGCCGACCTGCCGCCCCACTATGCCGTGGCCCCGCATCGCTACGCGCCCCACTTCGCCCCCCAGCCGCCCCCTCAGTTTCATGGACACTTCAGTGTTTTCAGGGAGCCCCTAAAGGGGCCGGGGCCGGGCCCGGCGGGGCTGCCCGGGCTGCTGGTCACGCCGCCCAACTCCCCGGTGCTGGAGTATTTTCCGGCCGGGGGCCCCCCCGAGGACTGCAAGCCCAAACGCGGCCGCCGCTCGTGGGCGCGCAAGCGGACGGCGACGCACAACTGTGAATACCCGGGCTGCGGCAAGACGTACACCAAGAGCTCCCACCTCAAGGCGCACATGCGGACGCACACGG
Seq C2 exon
GTGAGAAGCCCTACCACTGCACCTGGGAAGGCTGCGGCTGGAAGTTCGCCCGTTCCGATGAGCTGACCCGCCACTACCGCAAGCACACGGGGCACCGGCCCTTCCAGTGCCACCTCTGCGAGCGGGCCTTCTCCCGCTCCGACCACCTGGCCCTGCACATGAAGCGGCACATGTGAGCGGGGGGCTGCGGGCGCGCTCGGCACCCCCTCCACCGAGCGACTCCCTGGAGCAGCTCCTGCTGTAAATAGCGTTGGGGAGCAGCCCGGCCCTTCTCGCTTGTAGCTGATAACTATTTTTCTCCTCCTGCCTCTGCTGTGAGAGCGGGGCTCGGCTGCGTGCTGGGGGAAGGATGGGCTGCTGTGGGGTGGAGGCGAGGAGCAGGGCTATGCGAAGTCCCTCGGCCTGCTCCTGTTGCTGGAGGGCTGGTGCAGCAGGGATCTGTCTCCCCAGAGCTCCCCGCTTGTATTTGGCATTGGCTTCAAAACCTTCTCCCCGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010101-'2-2,'2-0,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=0.855 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PU(35.7=3.1)
C2:
PF134651=zf-H2C2_2=PD(60.7=28.8),PF134651=zf-H2C2_2=WD(100=44.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCATCTCCACCTTCACCA
R:
GCTACAAGCGAGAAGGGCC
Band lengths:
345-1297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]