GgaEX1002795 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34679907-34691283:-
Coord C1 exon
chr7:34691191-34691283
Coord A exon
chr7:34680459-34680551
Coord C2 exon
chr7:34679907-34679999
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTTATGTCTCATAGGTG
3' ss Score
9.75
5' ss Seq
TCGGTACTC
5' ss Score
3.1
Exon sequences
Seq C1 exon
ATTAAATACAAGGAGAGCATTGGAAAAGGAACTCCAATTCCTGATCTCCCAGAAGTGAAACGTGTCAAGGAGACGCAGAAGCACATCAGCTCG
Seq A exon
GTGTTATATAAGGAGAACATAGGGAAAGCCACTCCAACCCCTGTGACTCCTGAGATGGAGAGAGTCAAACGCAATCAAGAGATCATTAGCTCG
Seq C2 exon
GTTTTGTACAAAGAAAATGTGGGGAAAGTGACCCCAACACCCATCACTCCAGAGATGGAGAGAGTCAAACGCAATCAAGAGATCATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'71-77,'71-76,83-77
Average complexity
C1
Mappability confidence:
63%=60=25%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=0.719 C2=0.530
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
A:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(59.3=51.6)
C2:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGAGAGCATTGGAAAAGGA
R:
TCTCTTGATTGCGTTTGACTCTCT
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]