GgaEX1002903 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHE5]
Coordinates
chr2:88865595-88869897:-
Coord C1 exon
chr2:88869682-88869897
Coord A exon
chr2:88867942-88868088
Coord C2 exon
chr2:88865595-88865767
Length
147 bp
Sequences
Splice sites
3' ss Seq
GACTGTTCTTGCTGTGTAAGGTA
3' ss Score
5.07
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGCAACGTGGAATTCTGGTTAGGTCAGCTGCTGAATGGGATTCGGAAAACAATCCACACTATCATTAGAGAGGCATCAGTGGCCATTAGCGACTCAGGATTTAAGCTGTATGACTTTCAGGCAATGTTTCCTGCACAAATAGGACTTCTGGGAATTCAAATGATCTGGACCAGAGATGCAGAGAATGCCCTGAACAGTACCAAAACAGACAAAAAG
Seq A exon
GTAATGCACGCCACAAATCAGAAGTTTTTGGAACTTCTAAATGATTTGATTGACATGACTACACACAATCTAACAAGAATGGAGCGCACAAAATATGAAACTTTAATTACCATTCATGTACACCAGAAGGATATCTTTGATGATTTG
Seq C2 exon
GTCCGTATGAACATTAAATCTCCATCCGATTTTGAATGGCAAAAGCAATCTCGGTTTTATTTTCTTGAAGACTTGGATAAATGTGTAATCCAAATCACGGATGTGGAGTTCACCTACTGCAATGAATACTTAGGATGTACAGACAGGCTCGTCATAACTCCTTTAACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013268-'44-50,'44-48,45-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(7.0=40.3)
A:
NO
C2:
PF127742=AAA_6=PU(12.0=32.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATTAGCGACTCAGGAT
R:
AGGTGAACTCCACATCCGTGA
Band lengths:
252-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]