GgaEX1005324 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53611988-53613505:-
Coord C1 exon
chrZ:53613473-53613505
Coord A exon
chrZ:53612796-53612901
Coord C2 exon
chrZ:53611988-53612062
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTCTCTATCTGTACTCCTAGGTA
3' ss Score
9.03
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTTAAAGAATAAAATCTGGGTGAATGAGTTCAG
Seq A exon
GTATGGAGGCTTTTCCTTGGGAGCCAGAAGTTCCCATGTGCTTCCTCCAAGCAATGAAGTCACTGATGCCATTAAACAGGTGAAGAAGATCTTGGAGCTAGCACAG
Seq C2 exon
GGGAGTTCTGGAGATAGGTTTCTCAACAACTTGGCAAGTTTCATGAAAGGTCTGGACACAAAGAACAACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'42-56,'42-55,43-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(2.9=100)
A:
PF126982=ABC2_membrane_3=FE(9.2=100)
C2:
PF126982=ABC2_membrane_3=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATCTGGGTGAATGAGTTCAG
R:
CTTCACGTTGTTCTTTGTGTCCA
Band lengths:
98-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]