DreEX6056958 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6185626-6186302:+
Coord C1 exon
chr14:6185626-6185910
Coord A exon
chr14:6185993-6186131
Coord C2 exon
chr14:6186222-6186302
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACAAATGGATCCCTTGACAGCTT
3' ss Score
5.22
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGATGCTCCCTGTACAATGGGCGATGAGGAATGGTCTACACCAGAAGTGCCAGAAAGCATAATAGAGATTTTAACAACAAGGAACTGGACTATGAATGACCCATCGCCTGCTTGTGAGTGCAGCTGTAATGGCAAAAAGAAGATGCTCCCAGAATGCCCTGCGGGTGCAGGCGGTCTCCCACCTCCTCAGATTAAGATCAGTGAAACTGAGACTCTCCAGAACCTGACAGGACGAAACATCTCAGACTATCTAGTGAAGACCTACGCACAGATCATTGGAAAAAG
Seq A exon
CTTAAAAAACAAGATCTGGGTGAACGAATTTAGATATGGAGGATTTTCATTGGGAGCCAGAAGCACTCAGGTACTTCCTCCAGCTGAGGAGATTGACGACGCCATCTCTAGAGTCAGGGAGATCTTCCAACTGGGGAAG
Seq C2 exon
GACTCAGGATCAGCAGCCGACCGTTTCTTAAAAAGCCTGTCTGCATTTATCAATGGGTTGGACACTAAGAATAATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'37-41,'37-40,38-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(5.8=40.4)
C2:
PF126982=ABC2_membrane_3=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAATGACCCATCGCCTGC
R:
CCCATTGATAAATGCAGACAGGC
Band lengths:
252-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]