BtaEX6035693 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96292227-96295050:-
Coord C1 exon
chr8:96294956-96295050
Coord A exon
chr8:96293501-96293533
Coord C2 exon
chr8:96292227-96292332
Length
33 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGGCCCTCACTACAGCTT
3' ss Score
7.1
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AGAAAACAGAATACTGCTGACATCCTTCAGAACCTCACGGGAAGAAACATTTCGGATTATCTGGTGAAGACATACGTGCAGATCATAGCCAAAAG
Seq A exon
CTTAAAGAACAAGATCTGGGTGAATGAGTTTAG
Seq C2 exon
GTACGGTGGATTTTCCCTGGGTGCCAGTAATTCTCAGTCACTTCCTCCGAGTGAAGAAGTTAATGATGCCATCAAGCAAATGAAGAAACACTTGAAGGTGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(5.9=100)
A:
PF126982=ABC2_membrane_3=FE(2.1=100)
C2:
PF126982=ABC2_membrane_3=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCAGAACCTCACGGGAA
R:
TCACTCGGAGGAAGTGACTGA
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]