MmuEX6093493 @ mm10
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53059257-53061581:-
Coord C1 exon
chr4:53061487-53061581
Coord A exon
chr4:53060333-53060365
Coord C2 exon
chr4:53059257-53059362
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTTCTCTCTGCAGCTT
3' ss Score
12.44
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
AGAAAACAGAAAACCGCAGACATCCTTCAGAATCTGACAGGAAGAAATATTTCAGATTACCTGGTGAAGACGTACGTGCAGATCATAGCAAAGAG
Seq A exon
CTTAAAGAATAAGATCTGGGTGAACGAGTTTCG
Seq C2 exon
GTATGGCGGGTTTTCCCTGGGTGTCAGTAATTCTCAAGCACTTCCTCCGAGCCATGAAGTTAATGATGCTATCAAGCAAATGAAGAAACTCCTGAAGCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'44-49,'44-48,46-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(5.9=100)
A:
PF126982=ABC2_membrane_3=FE(2.1=100)
C2:
PF126982=ABC2_membrane_3=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAACCGCAGACATCCT
R:
CTGACACCCAGGGAAAACCC
Band lengths:
117-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types