DreEX0009885 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51977157-51978315:+
Coord C1 exon
chr1:51977157-51977251
Coord A exon
chr1:51977343-51977375
Coord C2 exon
chr1:51978210-51978315
Length
33 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTTTTATCTGTTCAGTTT
3' ss Score
8.27
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATTAAAGTCACCCATGATGAAACCCTGCAGAATCTGTCTGGAAGAAACATTTCAGACTATTTGGTGAAAACATACGCACAGATTATTGGGAAAAG
Seq A exon
TTTGAAGAACAAGCTCTGGGTCAACGAATTCAG
Seq C2 exon
ATATGGTGGCTTCTCATTGGGTGCACGAAACACACAGGCTCTCCCACCTGGCGATGAGCTCACTGATGCCATCTCTCACATCCGCAGCCGCTTCAGTCTTGAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(2.5=28.1)
A:
PF126982=ABC2_membrane_3=FE(3.1=100)
C2:
PF126982=ABC2_membrane_3=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCATGATGAAACCCTGCA
R:
TGTGTTTCGTGCACCCAATGA
Band lengths:
121-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]