RnoEX0004740 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69881897-69884248:-
Coord C1 exon
chr5:69884154-69884248
Coord A exon
chr5:69882947-69882979
Coord C2 exon
chr5:69881897-69882002
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTTGTCCTTTCTTTCTGCAGCTT
3' ss Score
11.89
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
AGAAAACAGAAGACTGCAGACATCCTTCAGAATCTGACCGGAAGAAATATTTCAGATTACCTGGTGAAGACATATGTGCAGATCATAGCAAAAAG
Seq A exon
CTTAAAGAATAAGGTCTGGGTGAATGAGTTTCG
Seq C2 exon
GTATGGCGGGTTTTCCCTGGGTGTCAGTGATTCTCAAGCACTTCCTCCGAGCCAAGAAGTTAATAATGCTATCAAGCAAATGAAGAAACTCCTGAAGCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'44-44,'44-43,45-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(5.9=100)
A:
PF126982=ABC2_membrane_3=FE(2.1=100)
C2:
PF126982=ABC2_membrane_3=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCTTCAGAATCTGACCGGA
R:
GCTCGGAGGAAGTGCTTGAGA
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]