GgaEX1005310 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54560302-54561544:-
Coord C1 exon
chrZ:54561450-54561544
Coord A exon
chrZ:54560979-54561011
Coord C2 exon
chrZ:54560302-54560407
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTCTCTTGACAGCTT
3' ss Score
11.65
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGAGAACAAGACACTGCTGACATCCTCCAGAATCTGACGGGTCGCAATATATCAGATTATCTAGTGAAGACCTACGCGCAGATCATTGGGAAAAG
Seq A exon
CTTAAAGAATAAAATCTGGGTGAATGAGTTCAG
Seq C2 exon
GTATGGAGGCTTTTCCTTGGGAGCCAGAAGTTCCCATGTGCTTCCTCCAAGCAATGAAGTCACTGATGCCATTAAACAGGTGAAGAAGATCTTGGAGCTAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'45-61,'45-60,46-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(4.4=50.0)
A:
PF126982=ABC2_membrane_3=FE(3.0=100)
C2:
PF126982=ABC2_membrane_3=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCAGAATCTGACGGGTC
R:
CACATGGGAACTTCTGGCTCC
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]