GgaEX1006133 @ galGal3
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1_CHICK
Description
NA
Coordinates
chr5:30562885-30572406:+
Coord C1 exon
chr5:30562885-30562966
Coord A exon
chr5:30564569-30564654
Coord C2 exon
chr5:30572314-30572406
Length
86 bp
Sequences
Splice sites
3' ss Seq
CGTGAGGTTTTTTTTGACAGACA
3' ss Score
4.55
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
GATGATCCTCTCACTAATCTAAACACAGCCTTTGATGTAGCTGAAAAATATCTGGATATCCCCAAGATGCTGGATGCAGAAG
Seq A exon
ACATTGTTGGAACTGCCCGTCCTGACGAGAAAGCCATCATGACCTATGTTTCTAGCTTCTACCACGCCTTCTCAGGAGCCCAGAAG
Seq C2 exon
GCGGAGACAGCAGCAAATCGTATTTGCAAGGTTCTGGCAGTCAACCAAGAGAATGAACAGCTCATGGAAGACTATGAAAAACTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-'11-15,'11-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.086 C2=0.177
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCACTAATCTAAACACAGCC
R:
TCACTGGCCAGTTTTTCATAGTCT
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]