Special

RnoEX0006328 @ rn6

Exon Skipping

Gene
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103393462-103402377:-
Coord C1 exon
chr6:103402296-103402377
Coord A exon
chr6:103401041-103401126
Coord C2 exon
chr6:103393462-103393554
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTGTCTCTCTATAGACA
3' ss Score
12.16
5' ss Seq
AAGGTACCC
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATGATCCACTCACAAACCTGAACACAGCCTTTGATGTGGCAGAGAGATACCTGGACATTCCAAAGATGCTGGATGCAGAAG
Seq A exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACCTATGTGTCTAGCTTCTACCATGCCTTCTCTGGAGCCCAGAAG
Seq C2 exon
GCGGAAACAGCAGCCAATCGAATCTGTAAAGTGTTGGCCGTCAATCAAGAGAATGAACAGCTTATGGAAGACTATGAGAAGCTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'19-12,'19-9,20-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (disopred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACAAACCTGAACACAGC
R:
TCACTGGCCAGCTTCTCATAGT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]