MmuEX6081845 @ mm10
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80184807-80193717:-
Coord C1 exon
chr12:80193636-80193717
Coord A exon
chr12:80192368-80192453
Coord C2 exon
chr12:80184807-80184899
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTGTCTCTCTACAGACA
3' ss Score
13.12
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GATGATCCACTCACAAACCTGAACACGGCCTTTGATGTGGCAGAGAGGTTCCTGGACATCCCTAAGATGCTGGATGCTGAAG
Seq A exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACTTATGTGTCTAGCTTCTATCATGCCTTCTCTGGAGCCCAGAAG
Seq C2 exon
GCAGAAACAGCAGCCAATCGCATCTGCAAAGTGTTGGCGGTCAATCAAGAGAACGAGCAGCTTATGGAAGACTATGAGAAGCTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'49-15,'49-12,50-15
Average complexity
S
Mappability confidence:
100%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTCACAAACCTGAACACG
R:
ACTGGCCAGCTTCTCATAGTCT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types