BtaEX6054750 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81039948-81048262:-
Coord C1 exon
chr10:81048181-81048262
Coord A exon
chr10:81046873-81046958
Coord C2 exon
chr10:81039948-81040040
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCCAGATTTTTCTTGACAGACA
3' ss Score
5.38
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GATGACCCACTGACAAACTTGAACACAGCTTTCGATGTAGCGGAGAAGTACCTGGACATTCCCAAGATGTTGGATGCGGAAG
Seq A exon
ACATCGTCGGAACCGCCCGCCCGGACGAGAAAGCCATCATGACTTACGTGTCCAGCTTCTACCACGCCTTCTCTGGAGCCCAGAAG
Seq C2 exon
GCCGAGACAGCAGCCAATCGCATCTGCAAGGTGCTGGCCGTCAACCAGGAGAACGAGCAGCTCATGGAGGACTACGAGAAGCTGGCCAGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255-'22-11,'22-9,23-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCCACTGACAAACTTGA
R:
CCAGCTTCTCGTAGTCCTCCA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]