GgaEX1007043 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2723642-2724637:-
Coord C1 exon
chr21:2724513-2724637
Coord A exon
chr21:2724147-2724252
Coord C2 exon
chr21:2723642-2724025
Length
106 bp
Sequences
Splice sites
3' ss Seq
CACACCATTTCTTCTCCCAGGTG
3' ss Score
9.2
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
ACCCATCAGCTCCAAAATCCTGTGAGGAAATGAGCTGCGAGTTCGGGGCTACGTGTGTGGAGGTCAACGGCTTTGCCCACTGCGAGTGCCCGTCCCCACTCTGCTCAGAGGCCAACATGACCAAG
Seq A exon
GTGTGTGGCTCTGATGGTGTTACCTATGGGGACCAGTGCCAGCTGAAGACCATTGCGTGCCGGCAGGGACAGCTCATCACAGTGAAACACGTGGGGCAATGCCACG
Seq C2 exon
AGTCTATAACTCACACGAGCCATACGATGCCACCCACCCCTCTGCCCACCTTGCCCTTGGACAAGCTCATCGTACCCCCACCACTGCAGCTGACCACCCAGGCTCCAGAGCCCACTGAGCTGGCCACCACCTCCCTGCTGATGGAAGCCAGCCCCACTACAAGAAGTCACCCTACAACAAGGCGTGTCACAACGACCCGACCTGTCACCACACCATGGATGACCCATGGAGTGCTGAAGACCACCGTCCGCCCACTCTCCACCTCTCCAGTGGTCCTGGCCACCACTCAGCCTCCCTACGCTGAATCGGGCAGTGCAGAAGGCAGTGGGGACCAGGAGATGAGCATCAGTGGGGACCAGGAATCCAGTGGGGCAGGCTCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'38-34,'38-32,39-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.984
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(12.7=16.7),PF0005016=Kazal_1=PU(34.0=42.9)
A:
PF0005016=Kazal_1=PD(62.3=91.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGTGTGTGGAGGTCAACG
R:
GGTGACTTCTTGTAGTGGGGC
Band lengths:
248-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]