GgaEX1014937 @ galGal4
Exon Skipping
Gene
ENSGALG00000010902 | CERS6
Description
ceramide synthase 6 [Source:HGNC Symbol;Acc:HGNC:23826]
Coordinates
chr7:18461604-18472232:-
Coord C1 exon
chr7:18472140-18472232
Coord A exon
chr7:18466702-18466830
Coord C2 exon
chr7:18461604-18461710
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCTTGCTCCTCTAGGAT
3' ss Score
12.34
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCACTGATGCCTGACCTTCATTATTACTACATTGCTGAATTATCATTCTACTGGTCCTTAATGTTTTCTCAATTCATTGACATCAAAAGAAAG
Seq A exon
GATTTTGGCATCATGTTTACACATCACATTGTAACAGTCACCCTGATAACCTTCTCATATGTAACCAATTTGACACGAGTGGGAACCCTGACCTTATGTCTCCATGATGCGGCTGATGTTGTCCTAGAG
Seq C2 exon
GCTGCCAAAATGGCAAACTATTGCAAGTGTCAAAAACTGAGTGACCTTCTGTTCCTTACGTTTGCCATTGTCTTCATTGTCAGTAGGCTTGGCATATATCCTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010902-'8-15,'8-12,9-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGATGCCTGACCTTCAT
R:
GGATATATGCCAAGCCTACTGACA
Band lengths:
194-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]