MmuEX6101829 @ mm10
Exon Skipping
Gene
ENSMUSG00000027035 | Cers6
Description
ceramide synthase 6 [Source:MGI Symbol;Acc:MGI:2442564]
Coordinates
chr2:69050780-69105159:+
Coord C1 exon
chr2:69050780-69050872
Coord A exon
chr2:69068629-69068757
Coord C2 exon
chr2:69105003-69105159
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTCCTTCTTTGAGGAC
3' ss Score
4.46
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CCACTCACAGCTGACCTTCACTACTATTACATCCTGGAGCTGTCATTTTATTGGTCTTTAATGGTTTCCCAGTTCACAGATATCAAAAGGAAG
Seq A exon
GACTTCGGCATTATGTTCCTGCACCACCTTGCAACAATTTTCTTAATAACCTTTTCATATGTCAACAACATGGCCCGAGTAGGAACCCTGGTCCTCTGTCTTCACGACTCAGCCGATGCTCTGCTAGAG
Seq C2 exon
GGTGTTGAATACCACATTATTTGAAAGTTGGGAGATCGTCGGACCCTACCCTTCCTGGTGGGTTTTTAACCTGCTGCTCTTGTTACTACAAGGGTTGAACTGCTTCTGGTCTTACCTGATTGTAAAAATAGCTTGCAAAACTGTTTCAAAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027035_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCACAGCTGACCTTCAC
R:
GCCTTTTGAAACAGTTTTGCAAGC
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types