RnoEX0020333 @ rn6
Exon Skipping
Gene
ENSRNOG00000024595 | Cers6
Description
ceramide synthase 6 [Source:RGD Symbol;Acc:1561599]
Coordinates
chr3:55273044-55334301:+
Coord C1 exon
chr3:55273044-55273136
Coord A exon
chr3:55291786-55291914
Coord C2 exon
chr3:55334145-55334301
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTCCTTCCTTGAGGAC
3' ss Score
3.11
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CCACTCACTGCTGACCTCCACTACTATTACATCCTGGAGCTGTCGTTTTATTGGTCTTTAATGGTTTCCCAGTTCACAGATATCAAAAGGAAG
Seq A exon
GACTTCGGCATTATGTTCCTGCACCACCTTGCAACCATTTTCTTAATAACTTTTTCATATGTCAACAACATGGCCCGAGTAGGAACCCTGGTCCTCTGTCTTCACGACTCAGCCGATGCTCTGCTAGAG
Seq C2 exon
GGTGTTGAATACCACATTATTTGAAAGTTGGGAGATCGTTGGACCGTACCCATCCTGGTGGGTTTTTAACCTGCTGCTGTTGTTACTACAAGGGTTGAACTGCTTCTGGTCTTACCTGATTGTAAAAATAGCTTGCAAAACTGTTTCAAAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024595_MULTIEX1-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACTGCTGACCTCCACT
R:
GCCTTTTGAAACAGTTTTGCAAGC
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]