GgaEX1016199 @ galGal4
Exon Skipping
Gene
ENSGALG00000008532 | COBRA1
Description
negative elongation factor B [Source:RefSeq peptide;Acc:NP_001006202]
Coordinates
chr17:1905840-1907731:+
Coord C1 exon
chr17:1905840-1905946
Coord A exon
chr17:1906904-1907045
Coord C2 exon
chr17:1907623-1907731
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTTATGTTGTGTAGTCG
3' ss Score
5.22
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTCTTGCAGGAGAACAGAATAGCTTGTGAGATTGGGCTATACTATATCCTTCACATAACTAAACAGAGGAACAAGAATGCTTTCCTCAGACTCCTGCCAGCACTAG
Seq A exon
TCGAGACATTCAGCGACTTGGCCTTCAGTGATATATTTCTGCATCTGCTCACTGGTAACCTCACACTGCTGGGTGATGAATTTGCAGTTGAAGAGTTCTGCACCAGTCTCTTTGATGGCTTCTTTCTCACTGCATGCTCAAG
Seq C2 exon
AAAGGAGAATGTACACAGACATGTGCTAAGATTGCTGCTTCATCTGCATCACAAAGTGGTGCCTGCCAAATTAGAGTCTCTCCAGAAGGCTTTGGAACCCACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532-'16-20,'16-19,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(10.4=100)
A:
PF062098=COBRA1=FE(10.0=100)
C2:
PF062098=COBRA1=FE(7.6=100)
Main Skipping Isoform:
ENSGALT00000013905fB6306
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGAGAACAGAATAGCTTGT
R:
GGGTTCCAAAGCCTTCTGGAG
Band lengths:
202-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]