GgaEX1016333 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83561973-83563269:+
Coord C1 exon
chr3:83561973-83562029
Coord A exon
chr3:83562730-83562993
Coord C2 exon
chr3:83563105-83563269
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTTTATGTGTGTGTTTCAGAAT
3' ss Score
11.76
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
TTCAGACAGGTGGTCCAGGCATACCAGAAGAAAAGAAGGTTGAAGCTCAAATACAAA
Seq A exon
AATGCTCCATAAGTGCAATGACAGATTTAGTTTTCCTGGTAGATGGTTCATGGAGTGTAGGGAGAAATAACTTCAGATATATTCTGGACTTCATGGTTGCCCTTGTATCAGCTTTCGACATTGGGGAAGAAAAGACAAGAGTTGGAGTTGTTCAGTACAGTTCAGATACAAGAACAGAGTTCAATTTAAATCAGTATTTCAGAAGAAGTGATCTTCTTGATGCAATTAAAAGGATACCTTATAAAGGTGGCAACACAATGACAG
Seq C2 exon
GTGAAGCTATTGATTACCTGGTTAAAAACACTTTCACTGAGTCAGCTGGAGCAAGAAAAGGCTTTCCCAAAGTTGCAATTGTCATTACGGATGGAAAAGCTCAAGACGAAGTTGAAATTCCTGCAAGAGAGCTTCGCAACATAGGAGTTGAAGTTTTTTCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(46.2=89.9)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTCCAGGCATACCAGAA
R:
AACTTCAACTCCTATGTTGCGA
Band lengths:
204-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]