GgaEX1016460 @ galGal4
Exon Skipping
Gene
ENSGALG00000016155 | COL19A1
Description
collagen, type XIX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2196]
Coordinates
chr3:82448665-82451104:-
Coord C1 exon
chr3:82451024-82451104
Coord A exon
chr3:82449240-82449365
Coord C2 exon
chr3:82448665-82448727
Length
126 bp
Sequences
Splice sites
3' ss Seq
AAATCTTGTTTTTATTTTAGTGC
3' ss Score
7.21
5' ss Seq
AAAGTATGA
5' ss Score
3.87
Exon sequences
Seq C1 exon
ATTGAACTTTACCGCATAACAGTTTATTGTAATCCAAAAGTTGCAACAGAAGATACGTGTTGTGAAATATCTGCGGACCTG
Seq A exon
TGCCCACATGAGGACAGATTACTTGCTACTACTTCATCACCAGTGTCTGCTCATGCCAGCAAAATATACACTCTTCCAGGAACACAGCAAGAATCTACGGACAGATGCCACTGCTTTCCAACTAAA
Seq C2 exon
GGAGAAGCAGGATTACCAGGAGTTGCTGGTTTGCCAGGCCAGAAAGGGCATAAAGGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016155-'13-8,'13-7,14-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.476 C2=0.810
Domain overlap (PFAM):
C1:
PF133851=Laminin_G_3=PD(6.5=37.0)
A:
PF0139113=Collagen=PU(1.7=2.4)
C2:
PF0139113=Collagen=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACTTTACCGCATAACAGTTT
R:
TCACCTTTATGCCCTTTCTGG
Band lengths:
139-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]