MmuEX6023335 @ mm10
Exon Skipping
Gene
ENSMUSG00000026141 | Col19a1
Description
collagen, type XIX, alpha 1 [Source:MGI Symbol;Acc:MGI:1095415]
Coordinates
chr1:24525604-24530008:-
Coord C1 exon
chr1:24529928-24530008
Coord A exon
chr1:24526385-24526510
Coord C2 exon
chr1:24525604-24525666
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTGGGGATTTTAGTGT
3' ss Score
4.16
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATCGAACTTCACCAACTTAGAATCTACTGCAATGCAAACTTCCTAGCTGAAGAATCATGTTGCAACTTATCACCTACTAAG
Seq A exon
TGTCCAGAGCAAGACGACTTTGGAAGTACTACTTCATCCTGGGGGACCTCTAACACTGGTAAAATGTCTTCATATCTGCCAGGAAAGCAGGAACTTAAAGACACATGCCAGTGTATTCCAAACAAG
Seq C2 exon
GAGGAAGCAGGATTACCAGGAACTCTCAGATCCATTGGACATAAGGGCGACAAAGGAGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026141-'11-7,'11-6,12-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.667 C2=0.905
Domain overlap (PFAM):
C1:
PF133851=Laminin_G_3=PD(7.1=40.7)
A:
PF0139113=Collagen=PU(0.1=0.0)
C2:
PF0139113=Collagen=FE(33.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACCAACTTAGAATCTACTGCA
R:
GGCTCTCCTTTGTCGCCCTTA
Band lengths:
138-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types