RnoEX0022952 @ rn6
Exon Skipping
Gene
ENSRNOG00000012759 | Col19a1
Description
collagen type XIX alpha 1 chain [Source:RGD Symbol;Acc:1308920]
Coordinates
chr9:30784710-30790640:-
Coord C1 exon
chr9:30790560-30790640
Coord A exon
chr9:30786158-30786283
Coord C2 exon
chr9:30784710-30784763
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTGGGGATTCTAGTGT
3' ss Score
3.16
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATTGAGCTTCACCAGCTCAGAATCTACTGCAATGCAAGCTTCCTAGCTGGAGAATCGTGTTGCAACTTATCGCCTACTAAG
Seq A exon
TGTCCAGAGCAAGATGACTTTGGAAGTACCACTTCATCCTGGGTGACCTCTCACACTGGTAAAACATCTTCATATCTGCCAGGAAAGCAGGAAATTAAAGATGCATGCCAGTGCATTCCAAACAAG
Seq C2 exon
GAGGAAGCAGGAAATCTGGGATCTTTTGGATATAAAGGCGACAAAGGCGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012759-'7-6,'7-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.524 C2=0.722
Domain overlap (PFAM):
C1:
PF133851=Laminin_G_3=PD(7.0=40.7)
A:
PF0139113=Collagen=PU(0.9=2.4)
C2:
PF0139113=Collagen=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGCTCAGAATCTACTGCA
R:
GCTCGCCTTTGTCGCCTTTAT
Band lengths:
124-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]