GgaEX1016552 @ galGal4
Exon Skipping
Gene
ENSGALG00000006708 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr13:13593248-13595152:+
Coord C1 exon
chr13:13593248-13593310
Coord A exon
chr13:13594561-13594605
Coord C2 exon
chr13:13595075-13595152
Length
45 bp
Sequences
Splice sites
3' ss Seq
AATATGGTCTGCGTTTTCAGGGT
3' ss Score
8.03
5' ss Seq
CGGGTATGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGAGAAAAGGGAAGCACGGGTCTGAAGGGAGAGAATGGCACGGACGGCGCGCCAGGACCCAAG
Seq A exon
GGTGAACCCGGTGAGAAGGGAGGAGTCGGCTCCATCGGACCCCGG
Seq C2 exon
GGCCCCCCTGGCCCAAAAGGGGAACAGGGTGACACAGTGGTCATCGACTACGACGGCCGCATCCTGGATGCACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006708-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=FE(34.5=100)
A:
PF0139113=Collagen=FE(24.1=100)
C2:
PF0139113=Collagen=PD(20.7=46.2),PF0139113=Collagen=PU(5.0=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAAGGGAAGCACGGGTC
R:
CATCCAGGATGCGGCCGT
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]