MmuEX6085233 @ mm9
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51378243-51381475:+
Coord C1 exon
chr11:51378243-51378305
Coord A exon
chr11:51378679-51378723
Coord C2 exon
chr11:51381398-51381475
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTTCCATGTGTTTCCACAGGGG
3' ss Score
10.58
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGTGAGCCAGGGGATGTGGGGCCCCGAGGAGAGAATGGAGTGGACGGCATTCCTGGACTAAAG
Seq A exon
GGGGAGCCCGGTCACCCAGGCGTGGATGGAGCCACAGGGCCCCGG
Seq C2 exon
GGTGCCCCGGGCCTCAAGGGAGAACAAGGTGACACAGTGGTAATCGACTATGACGGCAGGATCTTAGATGCCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.2=57.1),PF0139113=Collagen=FE(32.8=100)
A:
PF0139113=Collagen=FE(23.0=100)
C2:
PF0139113=Collagen=PD(19.7=46.2),PF0139113=Collagen=PU(5.1=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCAGGGGATGTGGG
R:
GGCATCTAAGATCCTGCCGTC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: