Special

GgaEX1016608 @ galGal4

Exon Skipping

Gene
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37065045-37069639:+
Coord C1 exon
chr4:37065045-37065122
Coord A exon
chr4:37068196-37068219
Coord C2 exon
chr4:37069595-37069639
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTAATGCATTTTGCCAACAGAGG
3' ss Score
5.75
5' ss Seq
ACGGTAATT
5' ss Score
7.31
Exon sequences
Seq C1 exon
GGGCCACCTGGACAGAAGGGTGATCAAGGTGCTACAGAGATAATTGATTATAATGGCAATATTCATGAAGCTCTTCAG
Seq A exon
AGGATTGCCACCCTCACTGTCACG
Seq C2 exon
GGACCACCAGGACCACCAGGACCCCAAGGGCTGCAAGGTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):

C1:
PF0139113=Collagen=PD(20.0=46.2)
A:
PF0139113=Collagen=PU(1.8=12.5)
C2:
PF0139113=Collagen=FE(24.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGACAGAAGGGTGATCA
R:
CTTTGGACCTTGCAGCCCTTG
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]