MmuEX1007268 @ mm10
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130552884-130560863:+
Coord C1 exon
chr3:130552884-130552961
Coord A exon
chr3:130559862-130559885
Coord C2 exon
chr3:130560819-130560863
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTGATCCGTTTTCCCAACAGAGA
3' ss Score
10.42
5' ss Seq
ACGGTAACT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GGTCCACCTGGACAAAAGGGGGATCCAGGAGCCACAGAGATCATAGACTACAATGGCAACCTCCATGAGGCCTTACAG
Seq A exon
AGAATTACCACCTTAACTGTCACG
Seq C2 exon
GGCCCCCCTGGACCTCCTGGACCTCAAGGACTACAAGGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(20.0=46.2)
A:
PF0139113=Collagen=PU(1.7=12.5)
C2:
PF0139113=Collagen=FE(24.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGACAAAAGGGGGATC
R:
TGGCCCTTGTAGTCCTTGAGG
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types