GgaEX1018535 @ galGal4
Exon Skipping
Gene
ENSGALG00000010153 | CYP21A2
Description
steroid 21-hydroxylase precursor [Source:RefSeq peptide;Acc:NP_001092828]
Coordinates
chr16:39430-40309:-
Coord C1 exon
chr16:40214-40309
Coord A exon
chr16:39764-39871
Coord C2 exon
chr16:39430-39537
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCAAGCCCTGTGCCCCACAGATG
3' ss Score
7.18
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GAGTTGAGCTCTTATGGGGCTGCCCCAGTGGACCTCTTTGAGGCGTTCACGTTCCACACCTGCAGCACCATCTGCCGCCTTGCCTTCGGGGACCTG
Seq A exon
ATGCCCCCCGAGGCGGAGGTGCGCTCCTTCACGCGCTGTGTGGTGGAACTGCTGGAGGTGTGGGGCCGGGCCAGTGTGCGGGCACTGGATGTGCTGCCTTCGCTAAGG
Seq C2 exon
GTGCTGCCCAACGCAGGGCTGCGGGAGCTGCTGCGCCTGGTGGAGCGCCGCGATGCCTTTGTGGAGTCCCAGATCCGATGGCACCAGGTGGGGAACGTGGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010153_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.0=100)
A:
PF0006717=p450=FE(8.0=100)
C2:
PF0006717=p450=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGCTCTTATGGGGCTGC
R:
CTGTGTCCCCACGTTCCCC
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]