DreEX6040168 @ danRer10
Exon Skipping
Gene
ENSDARG00000037550 | cyp21a2
Description
cytochrome P450, family 21, subfamily A, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-070103-6]
Coordinates
chr16:16707279-16707757:-
Coord C1 exon
chr16:16707662-16707757
Coord A exon
chr16:16707465-16707575
Coord C2 exon
chr16:16707279-16707365
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCGTTATCTTATTGTGACAGTAT
3' ss Score
4.81
5' ss Seq
AGGGTAACA
5' ss Score
4.9
Exon sequences
Seq C1 exon
GTGTTACGAGACTACAGTGGAAAGGCTGTGGATTTATCGGAGGACTTTACTGTGGCTTCGAGTAATGTCATCACAACTCTGACCTTCAGCAAAGCT
Seq A exon
TATGATAAAAGTTCAGCAGAGCTGCAGAAGCTGCAGGAGTGTTTGAATGAGATTGTTTCTCTCTGGGGTTCACCCTGGATCTCAGCCCTGGACTCCTTCCCTCTGCTCAGG
Seq C2 exon
AAATTTCCCAACCCCCCATTCTCTCGTCTAATGAAGGAGGTGGCCAGACGCGATGAGCTGATAGGAAAACACATAGAGGAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037550-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(9.4=96.9)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTACGAGACTACAGTGGAAAGG
R:
ACTCCTCTATGTGTTTTCCTATCAGC
Band lengths:
178-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]