HsaEX1010845 @ hg38
Exon Skipping
Gene
ENSG00000231852 | CYP21A2
Description
cytochrome P450 family 21 subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:2600]
Coordinates
chr6:32039356-32039835:+
Coord C1 exon
chr6:32039356-32039457
Coord A exon
chr6:32039546-32039647
Coord C2 exon
chr6:32039749-32039835
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACTCCCTCCTTTTCTGGCAGGAC
3' ss Score
9.97
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CGCATGAGAGCCCAGCCCGGCACCCCTGTGGCCATTGAGGAGGAATTCTCTCTCCTCACCTGCAGCATCATCTGTTACCTCACCTTCGGAGACAAGATCAAG
Seq A exon
GACGACAACTTAATGCCTGCCTATTACAAATGTATCCAGGAGGTGTTAAAAACCTGGAGCCACTGGTCCATCCAAATTGTGGACGTGATTCCCTTTCTCAGG
Seq C2 exon
TTCTTCCCCAATCCAGGTCTCCGGAGGCTGAAGCAGGCCATAGAGAAGAGGGATCACATCGTGGAGATGCAGCTGAGGCAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231852-'8-13,'8-10,12-13
Average complexity
S
Mappability confidence:
70%=60=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(20.5=100)
A:
PF0006717=p450=FE(7.3=100)
C2:
PF0006717=p450=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGAGCCCAGCCCGG
R:
CCTCAGCTGCATCTCCACGAT
Band lengths:
178-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains