BtaEX6098273 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6I9]
Coordinates
chr23:27171074-27171572:-
Coord C1 exon
chr23:27171477-27171572
Coord A exon
chr23:27171263-27171364
Coord C2 exon
chr23:27171074-27171160
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGTCCTTCTTTTCTGGCAGGAG
3' ss Score
9.47
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CGCATGAGAGTCCAGGCCGGTGCCCCCGTGACCATCCAGAAGGAATTCTCTCTGCTTACCTGCAGCATCATCTGTTACCTCACTTTTGGAAACAAG
Seq A exon
GAGGACACCTTAGTACATGCCTTTCACGACTGTGTTCAGGACTTGATGAAGACCTGGGACCACTGGTCCATCCAGATTTTGGACATGGTTCCTTTTCTCAGG
Seq C2 exon
TTCTTCCCCAACCCTGGGCTCTGGAGGCTGAAGCAGGCCATAGAGAACAGGGACCACATGGTGGAGAAGCAGCTGACGCGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001443-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.8=100)
A:
PF0006717=p450=FE(10.4=100)
C2:
PF0006717=p450=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAGTCCAGGCCGGTG
R:
CTTGTGGCGCGTCAGCTG
Band lengths:
180-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]