MmuEX6077217 @ mm10
Exon Skipping
Gene
ENSMUSG00000024365 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88591]
Coordinates
chr17:34802985-34803443:-
Coord C1 exon
chr17:34803348-34803443
Coord A exon
chr17:34803160-34803243
Coord C2 exon
chr17:34802985-34803071
Length
84 bp
Sequences
Splice sites
3' ss Seq
AGGACAGCACGTTGGTACAGACC
3' ss Score
-1.82
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CGCATGCGAGCCCAGGCTGGCACCCCCGTGGCCATCCATAAGGAATTCTCCTTCCTCACTTGTAGTATCATCTCCTGCCTCACTTTTGGAGACAAG
Seq A exon
ACCCTTCACGACTGTGTCCAGGACTTGTTGCAAGCCTGGAACCACTGGTCCATCCAAATCTTGACGATAATTCCCCTTCTCAGG
Seq C2 exon
TTCCTCCCCAACCCAGGCCTCCAGAAGCTGAAGCAGATCCAAGAGAGTCGGGACCATATTGTCAAGCAGCAGCTGAAGCGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024365-'6-13,'6-12,7-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.0=100)
A:
PF0006717=p450=FE(7.4=100)
C2:
PF0006717=p450=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGTGGCCATCCATAAGG
R:
CTTGTGCCGCTTCAGCTG
Band lengths:
160-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types