RnoEX6061589 @ rn6
Exon Skipping
Gene
ENSRNOG00000000428 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2461]
Coordinates
chr20:4487891-4488382:-
Coord C1 exon
chr20:4488287-4488382
Coord A exon
chr20:4488078-4488182
Coord C2 exon
chr20:4487891-4487977
Length
105 bp
Sequences
Splice sites
3' ss Seq
AGCATGCCCTCTTATTCCAGCAG
3' ss Score
5.55
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CGCATGAGAGCCCAGGCCGGTGCCTCTGTGGCCATCCATAAGGAATTCTCCTTACTCACCTGCAGTATCATCAGCTGTCTCACTTTCGGAGACAAG
Seq A exon
CAGGACAGCACTTTGCTGAATGCCACTCACAGCTGTGTCCGGGACTTGCTGAAAGCCTGGAATCACTGGTCCGTCCAAATCTTGGATATAATTCCCTTTCTCAGG
Seq C2 exon
TTCTTCCCCAATCCAGGCCTCTGGAAACTGAAGCAGTTCCAGGAGAGTAGGGACCATATCGTAATGCAGGAGCTGAAGAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000428-'6-5,'6-3,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.9=100)
A:
PF0006717=p450=FE(7.6=100)
C2:
PF0006717=p450=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGAGCCCAGGCCGG
R:
CTTGTGCCTCTTCAGCTCCTG
Band lengths:
181-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]