GgaEX1019491 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57586477-57673856:+
Coord C1 exon
chr1:57586477-57586879
Coord A exon
chr1:57664729-57664837
Coord C2 exon
chr1:57673761-57673856
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTTCAATTTGCAGGAA
3' ss Score
11.48
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
Exon sequences
Seq C1 exon
CCGGCAGGGAGTTTCCCACAATGCCCCGCTGCAGTGCGGCCGCCGATGGATGCTGCGCGGCTGCGCTGCCATTTGCAGCCGCCGCGGCTCGCAGCGCGCCCCGGGGCCCCGGCAGCGGTCGCCCCCCGACCCCCGACGGCCCCCAGCGCCTGCAGCCGCCGGCCACCCCCCGCCTGCCCCCTCCTTCTCCTTCGCGGCCCCTCTGCCCCGCCGCAATGAACCCCCCCGCCGCGGCCGGCGGGGAGGAGACGGGGGCGGCGGGCGGCGGCTGCCGGGGGGCCGAGGGCGGCGGGGAGGCGGCGGGTGCCGCCGGGGTCCCGGAGGAGCCGGGGCTGGCGGCGGCGGAGGAGTCGCTGGAGGAGAAGCTGCGGAACCTCACCTTCAGGAAGAAGGTGTCCTACAG
Seq A exon
GAAAGCAATCTCCAGGTCAGGCCTCCAGCACTTGGCTCCTGTGCATTCCCTCAACATTGCAGTCTCCAATGGACCTGTGAAGGAACCAAGGGCAGCCTTAGAGTGGACT
Seq C2 exon
GAAAATGCTGTTAACGGAGAGCATCTATGGTTGGAGACAAATGTTTCTGGGGACCTCTGTTACCTGGGGGAGGAAAGCTGCCAAGTGAAATTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'0-2,'0-0,5-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.734 A=0.362 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.9=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCCCTCCTTCTCCTTC
R:
AGATGCTCTCCGTTAACAGCA
Band lengths:
256-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]