RnoEX0027508 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64660388-64831473:-
Coord C1 exon
chr4:64830848-64831473
Coord A exon
chr4:64681822-64681930
Coord C2 exon
chr4:64660388-64660483
Length
109 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTTCTTGCTACAGGAA
3' ss Score
9.19
5' ss Seq
AGTGTAGGT
5' ss Score
3.31
Exon sequences
Seq C1 exon
CCGGCTGGTCGGGCGAGGCCGAGGGGAGGCGGAGAGAGGTGGCCTCTGATTGGTTGGGGAGGGGGAGTGGAGGCACGGAGTTTCCCACAATGCCCCGGTGCGGTGCAGCCGCGGATGGATGCTGCGGGAAGGGGCTGCCATTTGCTGCCCCTGCCAGCGGCGCGCGGACCTGCCCGCGCTCCCGCCGCCTCCAGCGCCCTCAGCCCGGCCGGCCTCTGCAGCGGCACCGCCTCGGCTTCTTCCGCGGCCGCCGGAGCGGTCGCCATGAACCCCAGCTCCTCGGCGGGAGAGGAGAGAGGGGCGACGGGCGGTAGCAGCAGCAGCGGAAGCGGCGCCGGGAGCTGCTGCCTGGGCGCCGAGGGCGGCGTGGACCCGCGGGGTGCAGGGGCAGCGGCGGCTGCTGCCTTGGAGGAGCCCGCGGCCGCCGGACAGAAAGAGAAGGAAGAGGCGCTGGAGGAGAAGCTGAGGGACTTAACTTTCCGGAAGCAGGTCTCTTACAG
Seq A exon
GAAAGCCATCTCCCGGACAGGCCTCCAGCATCTGGCTCCTGCACATCCTCTTGGTCTTCCTGTGGCAAACGGTCCAGCGAAGGAGCCCAGAGCGACTCTGGACTGGAGT
Seq C2 exon
GAGAATGCTGTGAATGGGGAGCACCTATGGCTGGAGACCAACGTCTCGGGGGACCTCTGCTACTTGGGGGAGGAGAACTGCCAAGTCCGATTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'0-3,'0-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.589 A=0.595 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.9=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACCCCAGCTCCTCGG
R:
GCTCCCCATTCACAGCATTCT
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]