MmuEX0014425 @ mm9
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:37084254-37249974:-
Coord C1 exon
chr6:37249563-37249974
Coord A exon
chr6:37099549-37099657
Coord C2 exon
chr6:37084254-37084349
Length
109 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTTCTTGCTGCAGGAA
3' ss Score
9.51
5' ss Seq
AGCGTAGGT
5' ss Score
5
Exon sequences
Seq C1 exon
AATGCCCCGGTGCGGTGCAGCCGCGGATGGATGCTGCGGGAAGGGGCTGCCATTTGCTGCCCCTGCCAGCGGCGCGCGGACCTGCCCGCGCTCCCGCCGCCTCCAGCGCCCTCAGCCCGACCGGCCTCTGCAGCGGCACCACCTCGGCTTCTTTCGCGGCCGCCGGAGCGGTCGCCATGAACCCCAGCTCCTCGGCGGGAGAGGAGAGAGGGGCGACGGGTGGCAGCAGCAGCAGCGGAAGCGGCGCCGGGAGCTGCTGCCTGGGCGCCGAGGGCGGCGCGGACCCGCGGGGTGCAGGGGCAGCGGCTGCTGCTGCCTTGGAGGAGCCCGCGGCCGCCGGACAGAAAGAGAAGGAAGAGGCGCTGGAGGAGAAGCTGAGGGACTTAACTTTCCGGAAGCAGGTCTCTTACAG
Seq A exon
GAAAGCCATCTCCCGGACAGGCCTCCAGCATCTGGCACCTGCACATCCTCTTGGTCTTCCTGTGGCTAACGGTCCAGCGAAGGAGCCCAGAGCCACTCTGGACTGGAGC
Seq C2 exon
GAGAATGCTGTGAATGGGGAGCACCTGTGGCTGGAGACCAACGTTTCAGGGGACCTCTGCTACCTGGGGGAGGAGAACTGCCAAGTCCGATTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'0-3,'0-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=0.595 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.9=75.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACCCCAGCTCCTCGG
R:
GCTCCCCATTCACAGCATTCT
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: