DreEX0003568 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4646401-4698462:-
Coord C1 exon
chr4:4697779-4698462
Coord A exon
chr4:4648959-4649067
Coord C2 exon
chr4:4646401-4646496
Length
109 bp
Sequences
Splice sites
3' ss Seq
GTGTTGGTTCTGCTCTGCAGGAA
3' ss Score
9.51
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CCCCGCCGATGCATGCAGCTGTTGTTGTAGCTCTGCATGGATAGAGCCGCGCCGACCGTGCGTGCGCGTGACTGCGCGTAAATCGAGAATAAATCGATCGGTCGACTGTTTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTGTTCGACACATGAGGGACATCGGAGGACACTGGATTTGGAAGGACTTCTAAGCACCAGAGGGGAGAAGGGGGTCCACTCGGTGCCGACCGGAGCATGATGGACCCCCTAGCCGACATGCGAGCGTCTCGGGCGGAGCGCAGCGGCAGAGGAGCCGCCGGTGGGGAATCGGCGGAAGATCAGACGCGCGGCTGCGGGAAAAACGCGGCGATGGGCGGCAGCGACAGCTTGAGCAGCTTCGCCGACATGGATGACTCGCTGGAGGATAAACTCAAAGGTCTGGCGTTCAGGAAGCAGATCTCCTATAG
Seq A exon
GAAAGCCATCTCGCGCTCGGGCCTCCAGCATTTGGGTCCGGCCCAGAATCCCTTCCCTGCCTTGAGCAACGGACCAGCCAAGGAGCTCCGCAACACCGTGGACTGGAGT
Seq C2 exon
GAAAACGCAGTGAACGGTGATCATCTGTGGCTGGAGACCAACTGCTCCGGTGAACTCTGCTACCTGGGTGAAGAAACCTGTGTGGCCAAGATCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-'0-1,'0-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.563 A=0.459 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.9=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATGATGGACCCCCTAG
R:
GATGATCACCGTTCACTGCGT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]