RnoEX0027561 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80854921-80873887:-
Coord C1 exon
chr3:80873546-80873887
Coord A exon
chr3:80855296-80855404
Coord C2 exon
chr3:80854921-80855016
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCCCCCTTTCTGTAGGAA
3' ss Score
9.75
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GGAGCGGAGGCTGCTTCCCCGGCACCTGGGAGTGGGTCGCGGGGACGCGCAGCACAGGGCGGGCGGAGCGCGCGCTCGCCATGAGCTTGGCGGGCGGTGCGGAGCCGGCGTGCTGAGCTCCGGCCGCCGGCCCGGCATGGGCGTCTCCCGCGAGCCCGCTGCCGGCCGGGGCTAGGGCCGGATGGAGCCGCGGGACCCCAGCCCCGAGGCCCGGAGCAGCGACTCGGAGTCGGCCTCCGCCTCGTCCAGCGGCTCCGAGCGCGACGCGGATCCGGAGCCGGACAAGGCTCCGCGGCGCTTAACCAAGAGGCGCTTCCCGGGGCTGCGGCTCTTTGGGCACAG
Seq A exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCCACGCCTGGGGCCCCGTGCGGTGAATCTGAGCGGCAGATCCGGAGTACTGTGGACTGGAGT
Seq C2 exon
GAGTCAGCAGCGTATGGGGAGCACATCTGGTTTGAGACCAACGTGTCCGGAGATTTCTGCTATGTCGGGGAGCAGTACTGTGTAGCTAAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'4-7,'4-5,17-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.743 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.1=75.0)
Main Skipping Isoform:
ENSRNOT00000024280fB4105
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGGCCGGATGGAGCC
R:
CTACACAGTACTGCTCCCCGA
Band lengths:
256-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]