MmuEX0014457 @ mm10
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91944374-91963657:-
Coord C1 exon
chr2:91963286-91963657
Coord A exon
chr2:91944761-91944869
Coord C2 exon
chr2:91944374-91944469
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCCTCCTTTCTGTAGGAA
3' ss Score
10.35
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GCGGCCGCGGCTGTCGGCACTTCCTGAAGCGGAGGCTGCTTCCCCGGCACCTGGGAGTGGGGCGCGAGGACGCGCAGCGCAGCGCAGGGCGGGCGGAGCGCGCGCTCGCCATGAGCTTGGCGGGCGGTGCGGAGCCGGCGTGCTGAGCCCCGGCCGCCGGCCCGGCATGGGCGTCTCCCGCGGGCCCGCCGCCGGCCGGGGCTAGGGCCGGATGGAGCCGCGGGACCCCAGCCCCGAGGGCCGGAGCAGCGACTCGGAGTCGGCCTCCGCCTCGTCCAGCGGCTCCGAGCGCGACGCGGGTCCGGAGCCCGACAAGGCGCCGCGGCGCCTGACCAAGCGGCGCTTCCCGGGGCTGCGGCTCTTTGGGCACAG
Seq A exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCCACGCCCGGGGCCCCGTGCGGTGAATCTGAGGAGCAGATCCAGAGCACTGTGGACTGGAGT
Seq C2 exon
GAGTCAGCAGTGTATGGGGAGCACATCTGGTTTGAGACCAACGTGTCCGGTGACTTCTGCTATGTCGGGGAGCAGCACTGTGTAGCTAAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'2-20,'2-18,14-20
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.703 C2=0.144
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.1=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGGCCGGATGGAGCC
R:
TCCCCGACATAGCAGAAGTCA
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types