DreEX6006502 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38740129-38810642:+
Coord C1 exon
chr7:38740129-38740778
Coord A exon
chr7:38810328-38810436
Coord C2 exon
chr7:38810547-38810642
Length
109 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTGCTTGCTTGCAGGAA
3' ss Score
10.29
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GGATTGTAAGAACTTCCTGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGAAGGAAAGAGAGGAGGGGGAGAGGAATGCGGGGGTTTGCTTATAGGATTATGTGTCTTGAAGGCGGAATGGGAAGCGGATCACACGTGGACATCTGTGAGGATCTGCAAGACTGAGCGCTGTTGGTGTTGTCCTCCCTCTCTTTGAGAGAGGCGGAGAGCAGGATGGTGCGACCCTTCTCTGCTTGTCGTTCTTGCCATGAGGACTCTCTGACTCTGTGAGTTTGGGATTGGTTCACATTGTTTGATTGACAGCTGGGGCTCCTGATGGAGCAAGAGCTGGGAGCAGGTTCTCAGGACAGGGAAGAGGTCACAGCCTCTCTGGCCTCCACGTCCGCTTCTTCATCTAACTCTGACATCCCATCCAAGCCTTTGCCCGAGGGGGATAGAGTGGCGGTTAGTCGGCGGCACAGCAGCAGGACTTTTACTGGGTTACGACTGTTTGGAAGGAG
Seq A exon
GAAGGCTATTGCCAAGTCCGGTCTCCAGCACCTCTCATGCCAGCCCAGTGCTGCAGTGTTAGCCAAAGGGGAAACGGACAGAGAAATACGCAACACAGTAGACTGGAGT
Seq C2 exon
GAATCAGCTGTATACGGAGAGCACATCTGGTTTGAGACGAATGTCTCGGGGGACTTCTGTTACGTTGGAGAACAGCACTGTTACGCCAAGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'1-4,'1-2,8-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(44.4=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACAGGGAAGAGGTCACA
R:
TGACTTGGCGTAACAGTGCTG
Band lengths:
251-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]