BtaEX6060551 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77236630-77238270:+
Coord C1 exon
chr15:77236630-77237375
Coord A exon
chr15:77237680-77237788
Coord C2 exon
chr15:77238175-77238270
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGCCGTCTCCTCCTCCGCAGGAA
3' ss Score
10.35
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
TGCAATCCCCGCTTTGCCGTGGAGGAGGTGCCCACCCAGCCGCAGCCAGCCGTGGTGGGGCCCCAGCTTTTGGTGGCACCCCTGCTGTTGGCTGGGCTCGTGGGCATGGAAGACGAGGAGGGCTTGCAGAAGGAGGATGTGAGGGTCGCGTTGCCGAGTGCCGCCCAGCCGGGCTCCGGGACCCCAGGGCCATCCCCACCGCCGCCCCGCAGCGCGCTGCCCCTGCTGCCCGTTCCGCGCTGGCGCCGGCGCCGGGCCTCCTCCCAGCTGCTGCCCGCAGACGTGGTGAAAGACCATGGGCTCTGGGGCCTGCACGGTCACTACCGACGCCTCAGCCAGCCGCGGCCCGTGAGCCAGAACCCCACCCCAGGGGGTCGAAGAGCCTCGGGTACCGCAGCCGGCCTCGGGATGCCCGCCCGCGTGCGCCCGCTGTGCCGCCGGCGGCAGGTAGCCCTGCGGCGCAAGTCAGCCGGACCCCAGACCTGGAGTGCCCTGCTTGC
Seq A exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCTGCTCCTGGGGCCCCGTGCAGCGAGCCTGAGCGGCAGATCCGGAGCACCGTGGACTGGAGT
Seq C2 exon
GAGTCAGCGACGTATGGGGAACACATCTGGTTTGAGACCAACGTGTCCGGGGACTTCTGCTACGTCGGAGAGCAGTACTGCGTCGCCAAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-'9-3,'9-1,11-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=0.595 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAGACCATGGGCTCTGG
R:
GATGTGTTCCCCATACGTCGC
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]