MmuEX0014457 @ mm9
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91784531-91803814:-
Coord C1 exon
chr2:91803443-91803814
Coord A exon
chr2:91784918-91785026
Coord C2 exon
chr2:91784531-91784626
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCCTCCTTTCTGTAGGAA
3' ss Score
10.35
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GCGGCCGCGGCTGTCGGCACTTCCTGAAGCGGAGGCTGCTTCCCCGGCACCTGGGAGTGGGGCGCGAGGACGCGCAGCGCAGCGCAGGGCGGGCGGAGCGCGCGCTCGCCATGAGCTTGGCGGGCGGTGCGGAGCCGGCGTGCTGAGCCCCGGCCGCCGGCCCGGCATGGGCGTCTCCCGCGGGCCCGCCGCCGGCCGGGGCTAGGGCCGGATGGAGCCGCGGGACCCCAGCCCCGAGGGCCGGAGCAGCGACTCGGAGTCGGCCTCCGCCTCGTCCAGCGGCTCCGAGCGCGACGCGGGTCCGGAGCCCGACAAGGCGCCGCGGCGCCTGACCAAGCGGCGCTTCCCGGGGCTGCGGCTCTTTGGGCACAG
Seq A exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCCACGCCCGGGGCCCCGTGCGGTGAATCTGAGGAGCAGATCCAGAGCACTGTGGACTGGAGT
Seq C2 exon
GAGTCAGCAGTGTATGGGGAGCACATCTGGTTTGAGACCAACGTGTCCGGTGACTTCTGCTATGTCGGGGAGCAGCACTGTGTAGCTAAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'3-10,'3-9,9-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.730 C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.1=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGGCCGGATGGAGCC
R:
TCCCCGACATAGCAGAAGTCA
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: