GgaEX1019520 @ galGal4
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22969648-22981573:-
Coord C1 exon
chr5:22981473-22981573
Coord A exon
chr5:22970449-22970557
Coord C2 exon
chr5:22969648-22969743
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGCCCTCCCGTGTTTTCCAGGAA
3' ss Score
10.83
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGACTCCACCTGCCCCACAAAGGTGTCCTCCCTTGTCTCCTTGGCAGCCAGCCCAGCCGATGGGGATCCCGGAGGATAAGGCACCGGCCAGCCGTGTATAA
Seq A exon
GAAAGCTATTGCCAAGTCCAGCCTCCAGCACATGGTAGCCCAGCCAAACCCCGTGCCAGCCCTGAGGAGTGAGTCAGAGAGGCAGATACGCAGCACTGTGGACTGGAGC
Seq C2 exon
GAGACTGCAGTCTATGGGGAGCACATCTGGTTTGAGACCAATGTCTCTGGGGATTTCTGCTACGTTGGGGAGCAGAACTGCATGGCCAAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'3-8,'3-6,11-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.351 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCCACCTGCCCCAC
R:
CAGCTTGGCCATGCAGTTCT
Band lengths:
194-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]