DreEX0026708 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7660490-7698991:+
Coord C1 exon
chr25:7660490-7661147
Coord A exon
chr25:7690589-7690697
Coord C2 exon
chr25:7698896-7698991
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTTTTCTCAGGAA
3' ss Score
11.19
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CTTCCTGAATCACTGGAGAAAGTGAAACAAAGAGGGGACAATCCTTTAACTTTACCAGCAGAAGAGCTGCAGTAGGTGAAAGACGAGGAAGTCGATCAGCTTATGGAGAAGAATAGAAAAAGACGTTAAAGCTGCACTTTGAGATTTACAGTACTTCCTGGTGTGTGTGTGTGTGTGTGTGTGCTGTTCTGCACCGTTGCTTGCTGAAGTCATACATTAAGTCGTATTTTAGTCGTCGTCTGCTATGATGGACTGGGCTTTATGGGACCGTGGTGTGTGTGACGGATGAAGTAGGATTGCATGTTTGAGATGGAGCGCCTTGAGGGAGAGGTGGAGGAGCTGTCCCGACCGTTGGAGGCTCTGCTGGATGGTGAAGAGCCTGGAGGTCCTGATTCTGCCTCCTCGTCCTGTTCTGACCTGTCCAACACAAAGCCTGTGGTTCAGCCCGGTCCCAACAACAACAGCAAGAGCTTCCCTGGACTGCGGCTCTTTGGTAGAAG
Seq A exon
GAAAGCCATCGCCAAAGCTGGTGTGCAGGATAACGCTGCTCAATCCGGCACAATAACACCTGCTAAAAGTGAACCCAACAAAAAGATATGCAACACCGTGGATTGGACC
Seq C2 exon
GAAAATGCCCAGTTGGGTCAACACGTGTGGTTTGAGACCAGTCCGGCAGGAGATTTCTGTTATGTGGGGGAGTCAAACTGTATCGCAAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-'0-3,'0-2,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.649 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.1=75.0)
Main Skipping Isoform:
ENSDART00000155016fB2278
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGGGAGAGGTGGAGGAG
R:
ACAGAAATCTCCTGCCGGACT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]