GgaEX0012165 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25825071-25844009:-
Coord C1 exon
chr5:25843975-25844009
Coord A exon
chr5:25825872-25825980
Coord C2 exon
chr5:25825071-25825166
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGCCCTCCCGTGTTTTCCAGGAA
3' ss Score
10.83
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
NAGCGCTTCACCGGCCTCAGGCTCTTCGGGCGCAC
Seq A exon
GAAAGCTATTGCCAAGTCCAGCCTCCAGCACATGGTAGCCCAGCCAAACCCCGTGCCAGCCCTGAGGAGTGAGTCAGAGAGGCAGATACGCAGCACTGTGGACTGGAGC
Seq C2 exon
GAGACTGCAGTCTATGGGGAGCACATCTGGTTTGAGACCAATGTCTCTGGGGATTTCTGCTACGTTGGGGAGCAGAACTGCATGGCCAAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'0-4,'0-3,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.392 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(42.1=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGCTCTTCGGGCG
R:
CAGCTTGGCCATGCAGTTCT
Band lengths:
114-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]